Transcript: LINC02060:6

Basic information

LNCipedia transcript ID: LINC02060:6 
LNCipedia gene ID: LINC02060
Location (hg19): chr5:87705664-87734907
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 761 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00009718; ENST00000506041; ENST00000506041.1; CTC-498M16.2-001; OTTHUMT00000370141.1
Alternative gene names: XLOC_004916; linc-TMEM161B-1; ENSG00000250156; CTC-498M16.2; ENSG00000250156.1; OTTHUMG00000162703.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.445 non-coding 
CPAT coding probability 4.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02060:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM161B-2:1
3.1 lnc-TMEM161B-2:1
4.0 lnc-TMEM161B-2:1
4.1 lnc-TMEM161B-2:1
5.0 lnc-TMEM161B-2:1
5.1 LINC02060:2
5.2 LINC02060:6