Transcript: LINC02069:3

Basic information

LNCipedia transcript ID: LINC02069:3 
HGNC Gene Symbol: LINC02069    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2069
Ensembl Gene ID: ENSG00000229433
Ensembl Transcript ID: ENST00000457449
RefSeq ID: NR_110043
Location (hg19): chr3:184474177-184490943
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2591 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000457449; ENST00000457449.1; RP11-329B9.1-001; OTTHUMT00000345416.1; NONHSAT093739; NR_110043; NR_110043.1
Alternative gene names: ENSG00000229433; RP11-329B9.1; ENSG00000229433.1; OTTHUMG00000156711.1; LINC02069; LOC101928992


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.5634 non-coding 
CPAT coding probability 5.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02069:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAGEF1-1:1
3.1 lnc-MAGEF1-1:1
4.0 lnc-MAGEF1-1:1
4.1 lnc-MAGEF1-1:1
5.0 lnc-MAGEF1-1:1
5.1 LINC02069:2
5.2 LINC02069:3