Transcript: LINC02070:3

Basic information

LNCipedia transcript ID: LINC02070:3 
HGNC Gene Symbol: LINC02070    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2070
Ensembl Gene ID: ENSG00000241328
Ensembl Transcript ID: ENST00000460586
RefSeq ID: NR_135563
Location (hg19): chr3:86531093-86546146
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1321 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00005554; ENST00000460586; ENST00000460586.1; RP11-331K15.1-001; OTTHUMT00000352831.1; NONHSAT090673; NR_135563.1
Alternative gene names: XLOC_002724; linc-CHMP2B-3; ENSG00000241328; RP11-331K15.1; ENSG00000241328.1; OTTHUMG00000158995.1; LINC02070; LOC101927494


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.0254 non-coding 
CPAT coding probability 2.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02070:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CADM2-2:1
3.1 lnc-CADM2-2:1
4.0 lnc-CADM2-2:1
4.1 lnc-CADM2-2:1
5.0 lnc-CADM2-2:1
5.1 LINC02070:2
5.2 LINC02070:3