Transcript: LINC02071:4

Basic information

LNCipedia transcript ID: LINC02071:4 
HGNC Gene Symbol: LINC02071    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2071
Ensembl Gene ID: ENSG00000249383
Ensembl Transcript ID: ENST00000514726
Location (hg19): chr17:49389970-49412526
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1723 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025243; ENST00000514726; ENST00000514726.1; RP11-1018N14.1-001; OTTHUMT00000368657.1; NONHSAT054753
Alternative gene names: XLOC_012522; linc-MBTD1; ENSG00000249383; RP11-1018N14.1; ENSG00000249383.1; OTTHUMG00000162372.1; LINC02071


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.8413 non-coding 
CPAT coding probability 9.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02071:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MBTD1-1:1
3.1 lnc-MBTD1-1:1
4.0 lnc-MBTD1-1:1
4.1 lnc-MBTD1-1:1
5.0 lnc-MBTD1-1:1
5.1 LINC02071:2
5.2 LINC02071:4