Transcript: LINC02077:3

Basic information

LNCipedia transcript ID: LINC02077:3 
HGNC Gene Symbol: LINC02077    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2077
Ensembl Gene ID: ENSG00000244461
Ensembl Transcript ID: ENST00000465795
Location (hg19): chr3:78087856-78095945
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 409 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005789; ENST00000465795; ENST00000465795.1; RP11-354H21.1-001; OTTHUMT00000352394.1; NONHSAT090570
Alternative gene names: XLOC_003166; linc-ZNF717-2; ENSG00000244461; RP11-354H21.1; ENSG00000244461.1; OTTHUMG00000158840.1; LINC02077


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.9961 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02077:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ROBO1-1:1
3.1 lnc-ROBO1-1:1
4.0 lnc-ROBO1-1:1
4.1 lnc-ROBO1-1:1
5.0 lnc-ROBO1-1:1
5.1 LINC02077:2
5.2 LINC02077:3