Transcript: LINC02100:21

Basic information

LNCipedia transcript ID: LINC02100:21 
HGNC Gene Symbol: LINC02100    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2100
Ensembl Gene ID: ENSG00000248693
Ensembl Transcript ID: ENST00000512978
Location (hg19): chr5:18704542-18746282
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 238 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009612; ENST00000512978; ENST00000512978.1; CTD-2023M8.1-001; OTTHUMT00000366267.1; NONHSAT100676
Alternative gene names: XLOC_004747; linc-MYO10-3; ENSG00000248693; CTD-2023M8.1; ENSG00000248693.1; OTTHUMG00000161873.1; LINC02100


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.2387 non-coding 
CPAT coding probability 2.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02100:21 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH18-5:1
3.1 lnc-CDH18-5:1
4.0 lnc-CDH18-5:1
4.1 lnc-CDH18-5:1
5.0 lnc-CDH18-5:1
5.1 LINC02100:5
5.2 LINC02100:21