Transcript: LINC02103:3

Basic information

LNCipedia transcript ID: LINC02103:3 
HGNC Gene Symbol: LINC02103    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2103
Ensembl Gene ID: ENSG00000249785
Ensembl Transcript ID: ENST00000512849
RefSeq ID: NR_134265
Location (hg19): chr5:28286496-28287772
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 523 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009625; ENST00000512849; ENST00000512849.1; CTD-2061E9.1-001; OTTHUMT00000366426.1; NONHSAT100814; NR_134265.1
Alternative gene names: XLOC_004762; linc-CDH9-2; ENSG00000249785; CTD-2061E9.1; ENSG00000249785.1; OTTHUMG00000161925.1; LINC02103; LOC105374698


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.0042 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02103:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH9-4:1
3.1 lnc-CDH9-5:1
4.0 lnc-CDH9-5:1
4.1 lnc-CDH9-5:1
5.0 lnc-CDH9-5:1
5.1 LINC02103:2
5.2 LINC02103:3