Transcript: LINC02106:13

Basic information

LNCipedia transcript ID: LINC02106:13 
LNCipedia gene ID: LINC02106
Ensembl Gene ID: ENSG00000250360
Ensembl Transcript ID: ENST00000510349
Location (hg19): chr5:50261521-50262842
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 569 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009660; ENST00000510349; ENST00000510349.1; CTD-2089N3.1-001; OTTHUMT00000368768.1; NONHSAT101378
Alternative gene names: XLOC_004815; linc-EMB-3; ENSG00000250360; CTD-2089N3.1; ENSG00000250360.1; OTTHUMG00000162402.1; AC008808.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.9051 non-coding 
CPAT coding probability 9.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02106:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EMB-3:5
3.1 lnc-EMB-3:5
4.0 lnc-EMB-3:5
4.1 lnc-EMB-3:5
5.0 lnc-EMB-3:5
5.1 LINC02106:7
5.2 LINC02106:13