Transcript: LINC02111:6

Basic information

LNCipedia transcript ID: LINC02111:6 
HGNC Gene Symbol: LINC02111    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2111
Ensembl Gene ID: ENSG00000250822
Ensembl Transcript ID: ENST00000505158
RefSeq ID: NR_033975
Location (hg19): chr5:17379015-17387419
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2312 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000505158; ENST00000505158.1; CTD-2139B15.4-001; OTTHUMT00000366276.1; NONHSAT100629; NR_033975; NR_033975.1
Alternative gene names: ENSG00000250822; CTD-2139B15.4; ENSG00000250822.1; OTTHUMG00000161877.1; LINC02111; LOC401177


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.3279 non-coding 
CPAT coding probability 7.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02111:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYO10-3:2
3.1 lnc-MYO10-3:1
4.0 lnc-MYO10-3:1
4.1 lnc-MYO10-3:1
5.0 lnc-MYO10-3:1
5.1 LINC02111:3
5.2 LINC02111:6