Transcript: LINC02120:6

Basic information

LNCipedia transcript ID: LINC02120:6 
HGNC Gene Symbol: LINC02120    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2120
Ensembl Gene ID: ENSG00000248279
Ensembl Transcript ID: ENST00000505518
RefSeq ID: NR_033832
Location (hg19): chr5:32947549-32962573
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2008 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000505518; ENST00000505518.1; CTD-2218G20.2-001; OTTHUMT00000366720.1; NONHSAT100939; NR_033832; ENST00000505518.5; NR_033832.1
Alternative gene names: ENSG00000248279; CTD-2218G20.2; ENSG00000248279.1; OTTHUMG00000162007.1; ENSG00000248279.5; LINC02120; LOC340113


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.0411 non-coding 
CPAT coding probability 32.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02120:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NPR3-1:2
3.1 lnc-NPR3-1:1
4.0 lnc-AC026703.1-1:2
4.1 lnc-AC026703.1-1:2
5.0 lnc-AC026703.1-1:2
5.1 LINC02120:3
5.2 LINC02120:6