Transcript: LINC02121:5

Basic information

LNCipedia transcript ID: LINC02121:5 
HGNC Gene Symbol: LINC02121    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2121
Ensembl Gene ID: ENSG00000250529
Ensembl Transcript ID: ENST00000507950
RefSeq ID: NR_134266
Location (hg19): chr5:5069305-5078424
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 432 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009593; ENST00000507950; ENST00000507950.1; CTD-2247C11.5-001; OTTHUMT00000365653.1; NR_134266.1
Alternative gene names: XLOC_004719; linc-IRX2-14; ENSG00000250529; CTD-2247C11.5; ENSG00000250529.1; OTTHUMG00000161660.1; LINC02121; LOC105374631


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.5558 non-coding 
CPAT coding probability 4.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02121:5 no no no no

Available literature

  1. Qin (2014), Expression pattern of long non-coding RNAs in renal cell carcinoma revealed by microarray., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MED10-4:1
3.1 lnc-MED10-7:1
4.0 lnc-MED10-7:1
4.1 lnc-MED10-7:1
5.0 lnc-MED10-7:1
5.1 LINC02121:3
5.2 LINC02121:5