Transcript: LINC02135:5

Basic information

LNCipedia transcript ID: LINC02135:5 
LNCipedia gene ID: LINC02135
Location (hg19): chr16:86320033-86326993
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2063 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000511252; TCONS_00024297
Alternative gene names: ENSG00000248463; XLOC_011813; linc-FOXF1-2; AC040170.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.1562 non-coding 
CPAT coding probability 7.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02135:5 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXF1-2:1
3.1 lnc-FOXF1-2:1
4.0 lnc-FOXF1-2:1
4.1 lnc-FOXF1-2:1
5.0 lnc-FOXF1-2:1
5.1 LINC02135:2
5.2 LINC02135:5