Transcript: LINC02140:17

Basic information

LNCipedia transcript ID: LINC02140:17 
LNCipedia gene ID: LINC02140
Location (hg19): chr16:54399916-54404348
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1791 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00025011
Alternative gene names: XLOC_011947; linc-IRX3-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.1532 non-coding 
CPAT coding probability 6.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02140:17 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRX3-1:2
3.1 lnc-IRX3-1:4
4.0 lnc-IRX3-1:4
4.1 lnc-IRX3-1:4
5.0 lnc-IRX3-1:4
5.1 LINC02140:10
5.2 LINC02140:17