Transcript: LINC02141:5

Basic information

LNCipedia transcript ID: LINC02141:5 
HGNC Gene Symbol: LINC02141    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2141
Ensembl Gene ID: ENSG00000261807
Ensembl Transcript ID: ENST00000568279
RefSeq ID: NR_110917
Location (hg19): chr16:59889257-60087877
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6586 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000568279.2; NR_110917.1
Alternative gene names: ENSG00000261807.2; RP11-430C1.1; LINC02141; LOC101927580


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.5796 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02141:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SETD6-2:2
4.1 lnc-SETD6-2:2
5.0 lnc-SETD6-2:2
5.1 LINC02141:3
5.2 LINC02141:5