Transcript: LINC02145:5

Basic information

LNCipedia transcript ID: LINC02145:5 
HGNC Gene Symbol: LINC02145    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2145
Ensembl Gene ID: ENSG00000250490
Ensembl Transcript ID: ENST00000507444
RefSeq ID: NR_028351
Location (hg19): chr5:6310554-6337405
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2419 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000507444; ENST00000507444.1; CTD-2324F15.2-001; OTTHUMT00000365707.1; NR_028351; NR_028351.1
Alternative gene names: ENSG00000250490; CTD-2324F15.2; ENSG00000250490.1; OTTHUMG00000161679.1; FLJ33360; LINC02145


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.637 non-coding 
CPAT coding probability 32.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02145:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MED10-2:2
3.1 lnc-MED10-2:2
4.0 lnc-MED10-2:2
4.1 lnc-MED10-2:2
5.0 lnc-MED10-2:2
5.1 LINC02145:3
5.2 LINC02145:5