Transcript: LINC02146:3

Basic information

LNCipedia transcript ID: LINC02146:3 
HGNC Gene Symbol: LINC02146    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2146
Ensembl Gene ID: ENSG00000249490
Ensembl Transcript ID: ENST00000504244
Location (hg19): chr5:20612734-20614874
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 509 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009616; ENST00000504244; ENST00000504244.1; CTD-2333M24.1-001; OTTHUMT00000366755.1; NONHSAT100705
Alternative gene names: XLOC_004750; linc-CDH18-2; ENSG00000249490; CTD-2333M24.1; ENSG00000249490.1; OTTHUMG00000162017.1; LINC02146


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.2685 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02146:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH18-1:1
3.1 lnc-CDH18-1:1
4.0 lnc-CDH18-1:1
4.1 lnc-CDH18-1:1
5.0 lnc-CDH18-1:1
5.1 LINC02146:2
5.2 LINC02146:3