Transcript: LINC02147:11

Basic information

LNCipedia transcript ID: LINC02147:11 
HGNC Gene Symbol: LINC02147    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2147
Ensembl Gene ID: ENSG00000249797
Ensembl Transcript ID: ENST00000509367
Location (hg19): chr5:117523162-117601730
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 807 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009494; ENST00000509367; ENST00000509367.1; CTD-3179P9.1-001; OTTHUMT00000370950.1; NONHSAT103394
Alternative gene names: XLOC_004524; linc-DMXL1-4; ENSG00000249797; CTD-3179P9.1; ENSG00000249797.1; OTTHUMG00000162888.1; LINC02147


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -213.5522 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02147:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DMXL1-4:4
3.1 lnc-DMXL1-4:4
4.0 lnc-DMXL1-4:4
4.1 lnc-DMXL1-4:4
5.0 lnc-DMXL1-4:4
5.1 LINC02147:6
5.2 LINC02147:11