Transcript: LINC02153:28

Basic information

LNCipedia transcript ID: LINC02153:28 
LNCipedia gene ID: LINC02153
Ensembl Gene ID: ENSG00000254026
Ensembl Transcript ID: ENST00000519605
Location (hg19): chr8:20811523-20826415
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 550 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519605; ENST00000519605.1; RP11-369E15.2-001; OTTHUMT00000375271.1; NONHSAT125416
Alternative gene names: ENSG00000254026; RP11-369E15.2; ENSG00000254026.1; OTTHUMG00000163760.1; AC015468.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.0918 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02153:28 no no no no

Available literature

  1. Cui (2016), Long Non-Coding RNA: Potential Diagnostic and Therapeutic Biomarker for Major Depressive Disorder., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6V1B2-4:8
3.1 lnc-ATP6V1B2-5:8
4.0 lnc-ATP6V1B2-5:8
4.1 lnc-ATP6V1B2-5:8
5.0 lnc-ATP6V1B2-5:8
5.1 LINC02153:12
5.2 LINC02153:28