Transcript: LINC02153:32

Basic information

LNCipedia transcript ID: LINC02153:32 
HGNC Gene Symbol: LINC02153    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2153
Ensembl Gene ID: ENSG00000253199
Ensembl Transcript ID: ENST00000517573
Location (hg19): chr8:20831308-20832540
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 952 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517573; ENST00000517573.1; RP11-421P23.1-002; OTTHUMT00000375272.1; NONHSAT125420
Alternative gene names: ENSG00000253199; RP11-421P23.1; ENSG00000253199.1; OTTHUMG00000163761.1; LINC02153


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.8012 non-coding 
CPAT coding probability 8.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02153:32 no no no no

Available literature

  1. Cui (2016), Long Non-Coding RNA: Potential Diagnostic and Therapeutic Biomarker for Major Depressive Disorder., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6V1B2-4:11
3.1 lnc-ATP6V1B2-5:11
4.0 lnc-ATP6V1B2-5:11
4.1 lnc-ATP6V1B2-5:11
5.0 lnc-ATP6V1B2-5:11
5.1 LINC02153:16
5.2 LINC02153:32