Transcript: LINC02156:11

Basic information

LNCipedia transcript ID: LINC02156:11 
LNCipedia gene ID: LINC02156
Location (hg19): chr12:47811968-47814022
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 406 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021114; NONHSAT027924
Alternative gene names: XLOC_009728; linc-SLC48A1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.7273 non-coding 
CPAT coding probability 2.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02156:11 no no no no

Available literature

  1. Fan (2016), Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM113B-4:4
3.1 lnc-FAM113B-4:4
4.0 lnc-FAM113B-4:4
4.1 lnc-FAM113B-4:4
5.0 lnc-FAM113B-4:4
5.1 LINC02156:6
5.2 LINC02156:11