Transcript: LINC02157:3

Basic information

LNCipedia transcript ID: LINC02157:3 
HGNC Gene Symbol: LINC02157    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2157
Ensembl Gene ID: ENSG00000259763
Ensembl Transcript ID: ENST00000558885
Location (hg19): chr15:96779014-96779932
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 447 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558885.1; RP11-327J17.1-001; OTTHUMT00000415467.1; NONHSAT050227
Alternative gene names: ENSG00000259763.1; RP11-327J17.1; OTTHUMG00000171854.1; LINC02157


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.648 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02157:3 no no no no

Available literature

  1. Fan (2016), Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NR2F2-3:1
4.0 lnc-NR2F2-3:1
4.1 lnc-NR2F2-3:1
5.0 lnc-NR2F2-3:1
5.1 LINC02157:2
5.2 LINC02157:3