Transcript: LINC02158:10

Basic information

LNCipedia transcript ID: LINC02158:10 
HGNC Gene Symbol: LINC02158    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2158
Ensembl Gene ID: ENSG00000225611
Ensembl Transcript ID: ENST00000432377
RefSeq ID: NR_122070
Location (hg19): chr3:42812104-42815127
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 897 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000432377.1; RP11-70C1.1-001; OTTHUMT00000343625.1; NONHSAT089263; NR_122070.1
Alternative gene names: ENSG00000225611.1; RP11-70C1.1; OTTHUMG00000156257.1; LINC02158; LOC729083


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.365 non-coding 
CPAT coding probability 3.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02158:10 no no no no

Available literature

  1. Lin (2016), Primate-specific oestrogen-responsive long non-coding RNAs regulate proliferation and viability of human breast cancer cells., Open Biol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCBP2-1:1
4.0 lnc-CCBP2-3:1
4.1 lnc-CCBP2-3:1
5.0 lnc-CCBP2-3:1
5.1 LINC02158:4
5.2 LINC02158:10