Transcript: LINC02159:11

Basic information

LNCipedia transcript ID: LINC02159:11 
HGNC Gene Symbol: LINC02159    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2159
Ensembl Gene ID: ENSG00000253417
Ensembl Transcript ID: ENST00000518580
RefSeq ID: NR_027111
Location (hg19): chr5:160358785-160365633
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2323 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000518580; ENST00000518580.1; RP11-109J4.1-001; OTTHUMT00000374202.1; NONHSAT104871; ENST00000518580.5; NR_027111.1
Alternative gene names: ENSG00000253417; RP11-109J4.1; ENSG00000253417.1; OTTHUMG00000163562.1; ENSG00000253417.5; LINC02159; LOC285629


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.3288 non-coding 
CPAT coding probability 9.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02159:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP10B-1:3
3.1 lnc-ATP10B-1:1
4.0 lnc-ATP10B-1:1
4.1 lnc-ATP10B-1:1
5.0 lnc-ATP10B-1:1
5.1 LINC02159:4
5.2 LINC02159:11