Transcript: LINC02162:5

Basic information

LNCipedia transcript ID: LINC02162:5 
HGNC Gene Symbol: LINC02162    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2162
Ensembl Gene ID: ENSG00000249830
Ensembl Transcript ID: ENST00000512521
Location (hg19): chr5:3452930-3461774
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 574 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009331; ENST00000512521; ENST00000512521.1; RP11-121L11.3-001; OTTHUMT00000365545.1; NONHSAT100126
Alternative gene names: XLOC_004263; linc-IRX1-1; ENSG00000249830; RP11-121L11.3; ENSG00000249830.1; OTTHUMG00000161631.1; LINC02162


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.8364 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02162:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRX1-1:1
3.1 lnc-IRX1-1:1
4.0 lnc-IRX1-1:1
4.1 lnc-IRX1-1:1
5.0 lnc-IRX1-1:1
5.1 LINC02162:2
5.2 LINC02162:5