Transcript: LINC02162:7

Basic information

LNCipedia transcript ID: LINC02162:7 
LNCipedia gene ID: LINC02162
Location (hg19): chr5:3455459-3461516
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 291 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009851; NONHSAT100128
Alternative gene names: XLOC_004263; linc-IRX1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.5458 non-coding 
CPAT coding probability 6.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02162:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRX1-1:2
3.1 lnc-IRX1-1:2
4.0 lnc-IRX1-1:2
4.1 lnc-IRX1-1:2
5.0 lnc-IRX1-1:2
5.1 LINC02162:4
5.2 LINC02162:7