Transcript: LINC02171:5

Basic information

LNCipedia transcript ID: LINC02171:5 
HGNC Gene Symbol: LINC02171    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2171
Ensembl Gene ID: ENSG00000250632
Ensembl Transcript ID: ENST00000508619
RefSeq ID: NR_034136
Location (hg19): chr4:3675320-3679582
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1033 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000508619; ENST00000508619.1; RP3-513G18.2-001; OTTHUMT00000358567.1; NONHSAT094894; NR_034136; NR_034136.1
Alternative gene names: ENSG00000250632; RP3-513G18.2; ENSG00000250632.1; OTTHUMG00000159968.1; LINC02171; LOC100133461


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.114 non-coding 
CPAT coding probability 3.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02171:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRPAP1-1:2
3.1 lnc-LRPAP1-2:2
4.0 lnc-LRPAP1-2:2
4.1 lnc-LRPAP1-2:2
5.0 lnc-LRPAP1-2:2
5.1 LINC02171:3
5.2 LINC02171:5