Transcript: LINC02173:16

Basic information

LNCipedia transcript ID: LINC02173:16 
HGNC Gene Symbol: LINC02173    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2173
Ensembl Gene ID: ENSG00000249613
Ensembl Transcript ID: ENST00000504132
Location (hg19): chr4:107354781-107374605
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 521 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007586; ENST00000504132; ENST00000504132.1; RP13-612N21.1-001; OTTHUMT00000363306.1; NONHSAT097715
Alternative gene names: XLOC_003636; linc-SGMS2-3; ENSG00000249613; RP13-612N21.1; ENSG00000249613.1; OTTHUMG00000160992.1; LINC02173


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.3456 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02173:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AIMP1-1:7
3.1 lnc-AIMP1-1:7
4.0 lnc-AIMP1-1:7
4.1 lnc-AIMP1-1:7
5.0 lnc-AIMP1-1:7
5.1 LINC02173:8
5.2 LINC02173:16