Transcript: LINC02175:19

Basic information

LNCipedia transcript ID: LINC02175:19 
LNCipedia gene ID: LINC02175
Location (hg19): chr16:25078258-25080246
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1857 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000500478; TCONS_00024286
Alternative gene names: ENSG00000245776; XLOC_011678; linc-LCMT1; AC133552.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.1941 non-coding 
CPAT coding probability 3.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02175:19 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LCMT1-1:1
3.1 lnc-LCMT1-1:2
4.0 lnc-LCMT1-1:2
4.1 lnc-LCMT1-1:2
5.0 lnc-LCMT1-1:2
5.1 LINC02175:9
5.2 LINC02175:19