Transcript: LINC02198:24

Basic information

LNCipedia transcript ID: LINC02198:24 
LNCipedia gene ID: LINC02198
Location (hg19): chr5:68263568-68325754
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2341 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009687; NONHSAT101875
Alternative gene names: XLOC_004860; linc-CD180-9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.6704 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02198:24 no no no no

Available literature

  1. Lennox (2016), Cellular localization of long non-coding RNAs affects silencing by RNAi more than by antisense oligonucleotides., Nucleic Acids Res.
  2. Hu (2015), A common set of distinct features that characterize noncoding RNAs across multiple species., Nucleic Acids Res.
  3. Keramati (2015), 7SK small nuclear RNA inhibits cancer cell proliferation through apoptosis induction., Tumour Biol.
  4. Kraus (2015), Long non-coding RNA normalisers in human brain tissue., J Neural Transm (Vienna)
  5. Na (2015), Long non-coding RNA UCA1 contributes to the progression of prostate cancer and regulates proliferation through KLF4-KRT6/13 signaling pathway., Int J Clin Exp Med
  6. Pei (2015), Notch-1 promotes breast cancer cells proliferation by regulating LncRNA GAS5., Int J Clin Exp Med
  7. Rice (2015), Roles of microRNAs and long-noncoding RNAs in human immunodeficiency virus replication., Wiley Interdiscip Rev RNA
  8. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  9. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  10. Xiong (2015), STAT3‑regulated long non‑coding RNAs lnc‑7SK and lnc‑IGF2‑AS promote hepatitis C virus replication., Mol Med Rep
  11. Abdelmohsen (2013), Senescence-associated lncRNAs: senescence-associated long noncoding RNAs., Aging Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC125-4:2
3.1 lnc-CCDC125-4:3
4.0 lnc-CCDC125-4:3
4.1 lnc-CCDC125-4:3
5.0 lnc-CCDC125-4:3
5.1 LINC02198:9
5.2 LINC02198:24