Transcript: LINC02199:10

Basic information

LNCipedia transcript ID: LINC02199:10 
HGNC Gene Symbol: LINC02199    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2199
Ensembl Gene ID: ENSG00000250198
Ensembl Transcript ID: ENST00000506655
Location (hg19): chr5:8839871-8842572
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2702 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506655; ENST00000506655.1; RP11-143A12.3-003; OTTHUMT00000365866.1; NONHSAT100318
Alternative gene names: ENSG00000250198; RP11-417J1.4; ENSG00000250198.1; RP11-143A12.3; OTTHUMG00000161722.1; LINC02199


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.4447 non-coding 
CPAT coding probability 2.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02199:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MTRR-5:2
3.1 lnc-MTRR-5:2
4.0 lnc-MTRR-5:2
4.1 lnc-MTRR-5:2
5.0 lnc-MTRR-5:2
5.1 LINC02199:5
5.2 LINC02199:10