Transcript: LINC02201:12

Basic information

LNCipedia transcript ID: LINC02201:12 
HGNC Gene Symbol: LINC02201    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2201
Ensembl Gene ID: ENSG00000251538
Ensembl Transcript ID: ENST00000514657
Location (hg19): chr5:122035085-122040764
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 674 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514657; ENST00000514657.1; RP11-166A12.1-003; OTTHUMT00000371258.1; NONHSAT103480
Alternative gene names: ENSG00000251538; RP11-166A12.1; ENSG00000251538.1; OTTHUMG00000162984.1; ENSG00000251538.5; LINC02201


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.2027 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02201:12 no no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPIC-2:3
3.1 lnc-PPIC-3:3
4.0 lnc-PPIC-3:3
4.1 lnc-PPIC-3:3
5.0 lnc-PPIC-3:3
5.1 LINC02201:5
5.2 LINC02201:12