Transcript: LINC02202:22

Basic information

LNCipedia transcript ID: LINC02202:22 
LNCipedia gene ID: LINC02202
RefSeq ID: NR_109890
Location (hg19): chr5:158527491-158544486
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2863 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109890; NR_109890.1
Alternative gene names: LOC101927740


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.2605 non-coding 
CPAT coding probability 4.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02202:22 no no no no

Available literature

  1. Joung (2017), Genome-scale activation screen identifies a lncRNA locus regulating a gene neighbourhood., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBLCP1-5:4
4.0 lnc-UBLCP1-5:4
4.1 lnc-UBLCP1-5:4
5.0 lnc-UBLCP1-5:4
5.1 LINC02202:8
5.2 LINC02202:22