Transcript: LINC02202:29

Basic information

LNCipedia transcript ID: LINC02202:29 
HGNC Gene Symbol: LINC02202    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2202
Ensembl Gene ID: ENSG00000245812
Ensembl Transcript ID: ENST00000499583
Location (hg19): chr5:158527690-158544486
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2664 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499583; ENST00000499583.1; RP11-175K6.1-001; OTTHUMT00000373926.1; NONHSAT104813
Alternative gene names: ENSG00000245812; RP11-175K6.1; ENSG00000245812.2; OTTHUMG00000163513.1; LINC02202


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.2605 non-coding 
CPAT coding probability 4.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02202:29 no no no no

Available literature

  1. Joung (2017), Genome-scale activation screen identifies a lncRNA locus regulating a gene neighbourhood., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBLCP1-4:3
3.1 lnc-UBLCP1-5:3
4.0 lnc-UBLCP1-5:3
4.1 lnc-UBLCP1-5:3
5.0 lnc-UBLCP1-5:3
5.1 LINC02202:15
5.2 LINC02202:29