Transcript: LINC02208:22

Basic information

LNCipedia transcript ID: LINC02208:22 
HGNC Gene Symbol: LINC02208    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2208
Ensembl Gene ID: ENSG00000250891
Ensembl Transcript ID: ENST00000506769
Location (hg19): chr5:117803851-117897812
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2803 bp
Exons: 9
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009759; ENST00000506769; ENST00000506769.1; CTD-2281M20.1-002; OTTHUMT00000371171.1; NONHSAT103397
Alternative gene names: XLOC_004965; linc-SEMA6A-2; ENSG00000250891; CTD-2281M20.1; ENSG00000250891.1; OTTHUMG00000162951.2; LINC02208


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.2619 non-coding 
CPAT coding probability 2.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02208:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DTWD2-2:3
3.1 lnc-DTWD2-3:3
4.0 lnc-DTWD2-3:3
4.1 lnc-DTWD2-3:3
5.0 lnc-DTWD2-3:3
5.1 LINC02208:5
5.2 LINC02208:22