Transcript: LINC02222:5

Basic information

LNCipedia transcript ID: LINC02222:5 
HGNC Gene Symbol: LINC02222    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2222
Ensembl Gene ID: ENSG00000248717
Ensembl Transcript ID: ENST00000513535
Location (hg19): chr5:180111766-180113546
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1039 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009564; ENST00000513535; ENST00000513535.1; RP11-451H23.3-001; OTTHUMT00000372486.1; NONHSAT105707
Alternative gene names: XLOC_004682; linc-BTNL8-4; ENSG00000248717; RP11-451H23.3; ENSG00000248717.1; OTTHUMG00000163295.1; LINC02222


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.3579 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02222:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CNOT6-3:1
3.1 lnc-CNOT6-3:1
4.0 lnc-CNOT6-3:1
4.1 lnc-CNOT6-3:1
5.0 lnc-CNOT6-3:1
5.1 LINC02222:3
5.2 LINC02222:5