Transcript: LINC02223:12

Basic information

LNCipedia transcript ID: LINC02223:12 
HGNC Gene Symbol: LINC02223    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2223
Ensembl Gene ID: ENSG00000249937
Ensembl Transcript ID: ENST00000514771
Location (hg19): chr5:17850368-17929745
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 781 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514771; ENST00000514771.1; RP11-454P21.1-003; OTTHUMT00000366241.1; NONHSAT147321; ENST00000514771.5
Alternative gene names: ENSG00000249937; RP11-454P21.1; ENSG00000249937.1; OTTHUMG00000161859.1; ENSG00000249937.5; LINC02223


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.1898 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02223:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BASP1-6:2
3.1 lnc-BASP1-7:2
4.0 lnc-BASP1-7:2
4.1 lnc-BASP1-7:2
5.0 lnc-BASP1-7:2
5.1 LINC02223:7
5.2 LINC02223:12