Transcript: LINC02226:21

Basic information

LNCipedia transcript ID: LINC02226:21 
LNCipedia gene ID: LINC02226
Location (hg19): chr5:8333596-8457671
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1585 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000501071; ENST00000501071.1; RP11-480D4.1-001; OTTHUMT00000365848.1
Alternative gene names: ENSG00000245729; RP11-480D4.1; ENSG00000245729.1; OTTHUMG00000161709.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.6043 non-coding 
CPAT coding probability 1.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02226:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FASTKD3-1:2
3.1 lnc-FASTKD3-1:2
4.0 lnc-FASTKD3-1:2
4.1 lnc-FASTKD3-1:2
5.0 lnc-FASTKD3-1:2
5.1 LINC02226:10
5.2 LINC02226:21