Transcript: LINC02228:8

Basic information

LNCipedia transcript ID: LINC02228:8 
HGNC Gene Symbol: LINC02228    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2228
Ensembl Gene ID: ENSG00000251273
Ensembl Transcript ID: ENST00000507600
Location (hg19): chr5:25126414-25190765
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 534 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507600; ENST00000507600.1; RP11-549K20.1-001; OTTHUMT00000366516.1; NONHSAT100766
Alternative gene names: ENSG00000251273; RP11-549K20.1; ENSG00000251273.1; OTTHUMG00000161956.1; ENSG00000251273.2; LINC02228; ENSG00000251273.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.4555 non-coding 
CPAT coding probability 9.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02228:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH10-4:1
3.1 lnc-CDH10-4:1
4.0 lnc-CDH10-4:1
4.1 lnc-CDH10-4:1
5.0 lnc-CDH10-4:1
5.1 LINC02228:6
5.2 LINC02228:8