Transcript: LINC02229:9

Basic information

LNCipedia transcript ID: LINC02229:9 
HGNC Gene Symbol: LINC02229    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2229
Ensembl Gene ID: ENSG00000250313
Ensembl Transcript ID: ENST00000508486
RefSeq ID: NR_105001
Location (hg19): chr5:65803372-65807432
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 661 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000508486; ENST00000508486.2; RP11-5P22.3-001; OTTHUMT00000368628.2; NR_105001.1
Alternative gene names: ENSG00000250313; RP11-5P22.3; ENSG00000250313.2; OTTHUMG00000162359.2; LINC02229; LOC101928769


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.3231 non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02229:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD180-4:3
3.1 lnc-CD180-5:2
4.0 lnc-CD180-5:2
4.1 lnc-CD180-5:2
5.0 lnc-CD180-5:2
5.1 LINC02229:4
5.2 LINC02229:9