Transcript: LINC02232:27

Basic information

LNCipedia transcript ID: LINC02232:27 
LNCipedia gene ID: LINC02232
Location (hg19): chr4:65779204-65890002
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4985 bp
Exons: 9
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000072675.1|MICT00000265552.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
VSFQFIWK 92.3076923076923% sense-1
Lee translation initiation sites non-coding 
PhyloCSF score -0.7015 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02232:27 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-EPHA5-1:12
5.0 lnc-EPHA5-1:12
5.1 LINC02232:11
5.2 LINC02232:27