Transcript: LINC02236:3

Basic information

LNCipedia transcript ID: LINC02236:3 
HGNC Gene Symbol: LINC02236    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2236
Ensembl Gene ID: ENSG00000249734
Ensembl Transcript ID: ENST00000508881
Location (hg19): chr5:6795993-6826841
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009340; ENST00000508881; ENST00000508881.1; RP11-332J15.1-001; OTTHUMT00000365836.1; NONHSAT100224
Alternative gene names: XLOC_004274; linc-ADCY2-7; ENSG00000249734; RP11-332J15.1; ENSG00000249734.1; OTTHUMG00000161704.1; LINC02236


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.4991 non-coding 
CPAT coding probability 6.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02236:3 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAPD7-3:1
3.1 lnc-PAPD7-3:1
4.0 lnc-PAPD7-3:1
4.1 lnc-PAPD7-3:1
5.0 lnc-PAPD7-3:1
5.1 LINC02236:2
5.2 LINC02236:3