Transcript: LINC02237:14

Basic information

LNCipedia transcript ID: LINC02237:14 
HGNC Gene Symbol: LINC02237    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2237
Ensembl Gene ID: ENSG00000253434
Ensembl Transcript ID: ENST00000521753
Location (hg19): chr8:112388892-112527565
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 805 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521753.1; RP11-1101K5.1-003; OTTHUMT00000380771.1; NONHSAT128326; ENST00000521753.5
Alternative gene names: ENSG00000253434.1; RP11-1101K5.1; OTTHUMG00000164883.1; ENSG00000253434.5; LINC02237; ENSG00000253434.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.1651 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02237:14 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-422N16.3.1-4:2
4.0 lnc-RP11-422N16.3.1-4:2
4.1 lnc-RP11-422N16.3.1-4:2
5.0 lnc-RP11-422N16.3.1-4:2
5.1 LINC02237:3
5.2 LINC02237:14