Transcript: LINC02237:18

Basic information

LNCipedia transcript ID: LINC02237:18 
LNCipedia gene ID: LINC02237
Location (hg19): chr8:112754224-112770625
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2144 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT128333; FPKM1_group_31996_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.8267 non-coding 
CPAT coding probability 1.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02237:18 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-67H2.1.1-2:6
4.0 lnc-RP11-67H2.1.1-2:6
4.1 lnc-RP11-67H2.1.1-2:6
5.0 lnc-RP11-67H2.1.1-2:6
5.1 LINC02237:8
5.2 LINC02237:18