Transcript: LINC02237:19

Basic information

LNCipedia transcript ID: LINC02237:19 
LNCipedia gene ID: LINC02237
Location (hg19): chr8:112754225-112770625
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2141 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014834; NONHSAT128334
Alternative gene names: XLOC_006903; linc-UTP23-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.8267 non-coding 
CPAT coding probability 5.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02237:19 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-67H2.1.1-2:2
3.1 lnc-RP11-67H2.1.1-2:2
4.0 lnc-RP11-67H2.1.1-2:2
4.1 lnc-RP11-67H2.1.1-2:2
5.0 lnc-RP11-67H2.1.1-2:2
5.1 LINC02237:9
5.2 LINC02237:19