Transcript: LINC02238:4

Basic information

LNCipedia transcript ID: LINC02238:4 
HGNC Gene Symbol: LINC02238    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2238
Ensembl Gene ID: ENSG00000223479
Ensembl Transcript ID: ENST00000424953
Location (hg19): chr1:74100899-74175264
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424953; ENST00000424953.1; RP11-275A6.1-001; OTTHUMT00000026418.1; NONHSAT003950
Alternative gene names: ENSG00000223479; RP11-275A6.1; ENSG00000223479.2; OTTHUMG00000009567.1; ENSG00000223479.3; RP4-788P17.1; LINC02238


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.9648 non-coding 
CPAT coding probability 2.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02238:4 no no no no

Available literature

  1. Zhou (2017), Discovery and validation of immune-associated long non-coding RNA biomarkers associated with clinically molecular subtype and prognosis in diffuse large B cell lymphoma., Mol. Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FPGT-1:1
3.1 lnc-FPGT-2:1
4.0 lnc-FPGT-2:1
4.1 lnc-FPGT-2:1
5.0 lnc-FPGT-2:1
5.1 LINC02238:2
5.2 LINC02238:4