Transcript: LINC02238:5

Basic information

LNCipedia transcript ID: LINC02238:5 
HGNC Gene Symbol: LINC02238    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2238
Ensembl Gene ID: ENSG00000223479
Ensembl Transcript ID: ENST00000436262
Location (hg19): chr1:74175051-74180897
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 320 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436262; ENST00000436262.1; RP11-275A6.2-001; OTTHUMT00000026419.1; NONHSAT003951
Alternative gene names: ENSG00000241626; RP11-275A6.2; ENSG00000241626.1; OTTHUMG00000009568.1; ENSG00000223479.3; RP4-788P17.1; LINC02238


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -216.0778 non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02238:5 no no no no

Available literature

  1. Zhou (2017), Discovery and validation of immune-associated long non-coding RNA biomarkers associated with clinically molecular subtype and prognosis in diffuse large B cell lymphoma., Mol. Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FPGT-1:2
3.1 lnc-FPGT-2:2
4.0 lnc-FPGT-2:2
4.1 lnc-FPGT-2:2
5.0 lnc-FPGT-2:2
5.1 LINC02238:3
5.2 LINC02238:5