Transcript: LINC02241:9

Basic information

LNCipedia transcript ID: LINC02241:9 
HGNC Gene Symbol: LINC02241    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2241
Ensembl Gene ID: ENSG00000251629
Ensembl Transcript ID: ENST00000514876
Location (hg19): chr5:20611959-20879567
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 417 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514876; ENST00000514876.1; RP11-774D14.1-003; OTTHUMT00000367082.1; NONHSAT100704; ENST00000514876.5
Alternative gene names: ENSG00000251629; RP11-774D14.1; ENSG00000251629.2; OTTHUMG00000162067.2; ENSG00000251629.6; LINC02241


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -260.1488 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02241:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM9-4:2
3.1 lnc-PRDM9-4:2
4.0 lnc-PRDM9-4:2
4.1 lnc-PRDM9-4:2
5.0 lnc-PRDM9-4:2
5.1 LINC02241:4
5.2 LINC02241:9