Transcript: LINC02242:3

Basic information

LNCipedia transcript ID: LINC02242:3 
HGNC Gene Symbol: LINC02242    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2242
Ensembl Gene ID: ENSG00000249736
Ensembl Transcript ID: ENST00000507298
Location (hg19): chr5:66928094-66942617
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 641 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507298; ENST00000507298.1; RP11-83M16.5-001; OTTHUMT00000368623.1; NONHSAT101814
Alternative gene names: ENSG00000249736; RP11-83M16.5; ENSG00000249736.1; OTTHUMG00000162355.1; LINC02242


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.9171 non-coding 
CPAT coding probability 5.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02242:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD180-2:1
3.1 lnc-CD180-3:1
4.0 lnc-CD180-3:1
4.1 lnc-CD180-3:1
5.0 lnc-CD180-3:1
5.1 LINC02242:2
5.2 LINC02242:3