Transcript: LINC02250:7

Basic information

LNCipedia transcript ID: LINC02250:7 
LNCipedia gene ID: LINC02250
Location (hg19): chr15:25761570-25823925
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 377 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023591; NONHSAT041148
Alternative gene names: XLOC_011405; linc-UBE3A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -191.6765 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02250:7 no no no no

Available literature

  1. Meng (2015), Towards a therapy for Angelman syndrome by targeting a long non-coding RNA., Nature
  2. Ziats (2013), Aberrant expression of long noncoding RNAs in autistic brain., J. Mol. Neurosci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBE3A-1:2
3.1 lnc-UBE3A-1:2
4.0 lnc-UBE3A-1:2
4.1 lnc-UBE3A-1:2
5.0 lnc-UBE3A-1:2
5.1 LINC02250:4
5.2 LINC02250:7