Transcript: LINC02260:4

Basic information

LNCipedia transcript ID: LINC02260:4 
LNCipedia gene ID: LINC02260
Location (hg19): chr4:55469380-55473298
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2214 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00007422
Alternative gene names: XLOC_003949; linc-CHIC2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.2841 non-coding 
CPAT coding probability 5.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02260:4 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KDR-2:1
3.1 lnc-KDR-2:2
4.0 lnc-KDR-2:2
4.1 lnc-KDR-2:2
5.0 lnc-KDR-2:2
5.1 LINC02260:2
5.2 LINC02260:4